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ASM49659v1

Organism name:
Candidatus Liberibacter americanus str. Sao Paulo (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Sao Paulo
BioSample:
SAMN02604175
BioProject:
PRJNA181147
Submitter:
University of Florida
Date:
2013/11/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000496595.1 (latest)
RefSeq assembly accession:
GCF_000496595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler Software Release: v. 2.5.3 (20101207_1124)
Genome coverage:
>100X
Sequencing technology:
454 GS FLX

IDs: 80291 [UID] 856868 [GenBank] 868338 [RefSeq]

See Genome Information for Candidatus Liberibacter americanus

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/24/2023 01:27:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,046
CDSs (total)::989
Genes (coding)::973
CDSs (with protein)::973
Genes (RNA)::57
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::16
CDSs (without protein)::16
Pseudo Genes (ambiguous residues)::0 of 16
Pseudo Genes (frameshifted)::8 of 16
Pseudo Genes (incomplete)::10 of 16
Pseudo Genes (internal stop)::1 of 16
Pseudo Genes (multiple problems)::3 of 16
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,195,201
Total ungapped length1,195,201
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000496615.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006604.1=NC_022793.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,195,201

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Liberibacter americanus str. Sao PauloCandidatus Liberibacter americanus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000325745.1Liberibacter crescenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.380.580.46

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena
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