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ASM49628v1

Organism name:
Bacillus toyonensis BCT-7112 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: BCT-7112
BioSample:
SAMN02389599
BioProject:
PRJNA225857
Submitter:
RUBINUM, S.A.
Date:
2013/11/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000496285.1 (latest)
RefSeq assembly accession:
GCF_000496285.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6
Genome coverage:
115x
Sequencing technology:
454; PacBio

IDs: 80101 [UID] 856218 [GenBank] 868298 [RefSeq]

See Genome Information for Bacillus toyonensis

There are 266 assemblies for this organism

See more

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/15/2022 05:48:07
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,173
CDSs (total)::5,035
Genes (coding)::4,856
CDSs (with protein)::4,856
Genes (RNA)::138
rRNAs::12, 12, 12 (5S, 16S, 23S)
complete rRNAs::12, 12, 12 (5S, 16S, 23S)
tRNAs::97
ncRNAs::5
Pseudo Genes (total)::179
CDSs (without protein)::179
Pseudo Genes (ambiguous residues)::0 of 179
Pseudo Genes (frameshifted)::106 of 179
Pseudo Genes (incomplete)::68 of 179
Pseudo Genes (internal stop)::36 of 179
Pseudo Genes (multiple problems)::28 of 179
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,025,419
Total ungapped length5,025,419
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000496295.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006863.1=NC_022781.1
Plasmid pBCT8CP006865.1=NC_022783.1
Plasmid pBCT77CP006864.1=NC_022782.1

Assembly statistics

MoleculeTotal
Length
All5,025,419
Chromosome 4,940,474
Plasmid pBCT87,971
Plasmid pBCT7776,974

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus toyonensis BCT-7112Bacillus toyonensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002243685.1Bacillus thuringiensissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.9285.5266.68

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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