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Source database (GenBank or RefSeq) File type

ASM49628v1

Organism name:: Bacillus toyonensis BCT-7112 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: BCT-7112T
BioSample:: SAMN02389599
BioProject:: PRJNA225857
Submitter:: RUBINUM, S.A.
Date:: 2013/11/08
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000496285.1 (latest)
RefSeq assembly accession:: GCF_000496285.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Newbler v. 2.6
Genome coverage:: 115x
Sequencing technology:: 454; PacBio

IDs: 80101 [UID] 856218 [GenBank] 868298 [RefSeq]

See Genome Information for Bacillus toyonensis

Pathogen Detection Resources

There are 315 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000496285.1	=	GCF_000496285.1	ASM49628v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/23/2023 04:50:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,186
CDSs (total)::5,048
Genes (coding)::4,870
CDSs (with protein)::4,870
Genes (RNA)::138
rRNAs::12, 12, 12 (5S, 16S, 23S)
complete rRNAs::12, 12, 12 (5S, 16S, 23S)
tRNAs::97
ncRNAs::5
Pseudo Genes (total)::178
CDSs (without protein)::178
Pseudo Genes (ambiguous residues)::0 of 178
Pseudo Genes (frameshifted)::105 of 178
Pseudo Genes (incomplete)::68 of 178
Pseudo Genes (internal stop)::36 of 178
Pseudo Genes (multiple problems)::28 of 178
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,025,419
Total ungapped length	5,025,419
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP006863.1	=	NC_022781.1
Plasmid pBCT8	CP006865.1	=	NC_022783.1
Plasmid pBCT77	CP006864.1	=	NC_022782.1

Molecule	Total Length
All	5,025,419
Chromosome	4,940,474
Plasmid pBCT8	7,971
Plasmid pBCT77	76,974

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	91.91	85.52	66.68

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ASM49628v1

See Genome Information for Bacillus toyonensis

Pathogen Detection Resources

There are 315 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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