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Cory_sp_KPL2004_V1

Organism name:
Corynebacterium sp. KPL2004 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: KPL2004
BioSample:
SAMN02596994
BioProject:
PRJNA170372
Submitter:
Broad Institute
Date:
2013/10/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000477875.1 (latest)
RefSeq assembly accession:
GCF_000477875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AXLN01
Assembly method:
allpaths v. R46499
Genome coverage:
180.0x
Sequencing technology:
Illumina

IDs: 69161 [UID] 820228 [GenBank] 824608 [RefSeq]

See Genome Information for Corynebacterium sp. KPL2004

History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Beck Jacobson, Kelsey Goguen, Evan Pagano and Katherine P. Lemon (Molecular Genetics, The Forsyth Institute, Boston, ... MA 02115, USA).
Bacteria provided by Beck Jacobson, Kelsey Goguen, Evan Pagano and Katherine P. Lemon (Molecular Genetics, The Forsyth Institute, Boston, MA 02115, USA). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length2,575,948
Total ungapped length2,569,883
Gaps between scaffolds0
Number of scaffolds6
Scaffold N50835,049
Scaffold L502
Number of contigs13
Contig N50375,100
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)13

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,575,94862,569,883835,04970

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Corynebacterium sp. KPL2004Corynebacterium sp. KPL2004

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023520795.1Corynebacterium accolenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.0689.4793.25

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna