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ASM46299v1

Organism name:
Salmonella enterica subsp. enterica serovar Gallinarum/Pullorum str. CDC1983-67 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CDC1983-67
BioSample:
SAMN01884234
BioProject:
PRJNA173203
Submitter:
Genomics Research Center, Harbin Medical University
Date:
2013/08/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000462995.1 (latest)
RefSeq assembly accession:
GCF_000462995.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Phred v. 0.020425.c/Phrap v. 0.990329/Consed v. 14.0
Genome coverage:
5X
Sequencing technology:
Sanger ABI3730

IDs: 57621 [UID] 773068 [GenBank] 773928 [RefSeq]

See Genome Information for Salmonella enterica

There are 534230 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from Genomics Research Center, Harbin Medical University, Harbin, China
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000462995.1-RS_2024_03_14
Annotation Date::03/14/2024 02:14:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,476
CDSs (total)::4,365
Genes (coding)::4,042
CDSs (with protein)::4,042
Genes (RNA)::111
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::76
ncRNAs::13
Pseudo Genes (total)::323
CDSs (without protein)::323
Pseudo Genes (ambiguous residues)::0 of 323
Pseudo Genes (frameshifted)::168 of 323
Pseudo Genes (incomplete)::96 of 323
Pseudo Genes (internal stop)::106 of 323
Pseudo Genes (multiple problems)::41 of 323
Pseudo Genes (short protein)::1 of 323
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,623,089
Total ungapped length4,623,089
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000463005.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003786.1=NC_022221.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,623,089

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Gallinarum/Pullorum str. CDC1983-67Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006365335.1Salmonella entericatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006365335.1Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9295.1088.74
Best-match type98.9295.1088.74

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna