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Cgr1.0

Description:
Cricetulus griseus 1.0
Organism name:
Cricetulus griseus (Chinese hamster)
Infraspecific name:
Strain: 17A/GY
BioSample:
SAMN02981520
BioProject:
PRJNA189319
Submitter:
CeBiTec, Bielefeld University
Date:
2013/08/29
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000448345.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
APMK01
Assembly method:
ALLPATHS-LG v. 41879
Expected final version:
no
Reference guided assembly:
de-novo
Genome coverage:
70.0x
Sequencing technology:
Illumina GAIIx

IDs: 57711 [UID] 773248 [GenBank]

See Genome Information for Cricetulus griseus

There are 4 assemblies for this organism

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Global statistics

Total sequence length2,332,774,290
Total assembly gap length243,693,405
Gaps between scaffolds0
Number of scaffolds28,749
Scaffold N501,236,516
Scaffold L50501
Number of contigs319,219
Contig N5011,899
Contig L5050,650
Total number of chromosomes and plasmids9
Number of component sequences (WGS or clone)319,219

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000448355.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1n/an/an/a4,664
Chromosome 2n/an/an/a3,368
Chromosome 3n/an/an/a2,835
Chromosome 4n/an/an/a2,452
Chromosome 5n/an/an/a4,517
Chromosome 6n/an/an/a817
Chromosome 7n/an/an/a1,009
Chromosome 8n/an/an/a514
Chromosome Xn/an/an/a3,233
unplacedn/an/an/a5,340

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule2,332,774,29028,7492,089,080,8851,236,516290,4700
Chromosome 1AllAssembled moleculeUnlocalized scaffolds562,710,8090562,710,8094,66404,664492,350,8640492,350,8641,146,38001,146,38082,467082,467000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds463,853,5420463,853,5423,36803,368432,337,4970432,337,4971,495,16601,495,16644,982044,982000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds278,070,2370278,070,2372,83502,835246,687,4410246,687,441821,4630821,46333,852033,852000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds227,501,4220227,501,4222,45202,452189,971,9110189,971,911577,3310577,33136,365036,365000
Chromosome 5AllAssembled moleculeUnlocalized scaffolds215,065,3350215,065,3354,51704,517189,534,0460189,534,0461,646,78701,646,78727,115027,115000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds160,296,4520160,296,4528170817152,531,7040152,531,7043,420,72503,420,72514,322014,322000
Chromosome 7AllAssembled moleculeUnlocalized scaffolds136,714,5140136,714,5141,00901,009124,898,0120124,898,0122,483,63402,483,63418,170018,170000
Chromosome 8AllAssembled moleculeUnlocalized scaffolds97,721,920097,721,920514051493,923,951093,923,9512,600,74702,600,7478,77908,779000
Chromosome XAllAssembled moleculeUnlocalized scaffolds136,595,9750136,595,9753,23303,233114,446,5320114,446,532622,4040622,40421,644021,644000
unplacedAssembled molecule54,244,0845,34052,398,9272,287,8932,7740
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