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ASM44503v1

Organism name:
Mycobacteroides abscessus subsp. bolletii 50594 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 50594
BioSample:
SAMN02603852
BioProject:
PRJNA191917
Submitter:
Seoul National University College of Medicine
Date:
2013/05/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000445035.1 (latest)
RefSeq assembly accession:
GCF_000445035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.7
Genome coverage:
76x
Sequencing technology:
GS FLX Titanium

IDs: 48041 [UID] 753688 [GenBank] 753708 [RefSeq]

See Genome Information for Mycobacteroides abscessus

There are 2253 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The bacteria and genomic DNA are available from the submitter.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/10/2023 10:24:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,315
CDSs (total)::5,261
Genes (coding)::5,167
CDSs (with protein)::5,167
Genes (RNA)::54
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::94
CDSs (without protein)::94
Pseudo Genes (ambiguous residues)::0 of 94
Pseudo Genes (frameshifted)::41 of 94
Pseudo Genes (incomplete)::67 of 94
Pseudo Genes (internal stop)::3 of 94
Pseudo Genes (multiple problems)::16 of 94
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,270,527
Total ungapped length5,270,527
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000445045.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP004374.1=NC_021282.1
Plasmid 1CP004375.1=NC_021278.1
Plasmid 2CP004376.1=NC_021279.1

Assembly statistics

MoleculeTotal
Length
All5,270,527
Chromosome 5,000,473
Plasmid 1172,814
Plasmid 297,240

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacteroides abscessus subsp. bolletii 50594Mycobacteroides abscessus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000270665.1Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000270665.1Mycobacteroides abscessustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9184.5085.73
Best-match type98.9184.5085.73

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna