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AzaInd2.1

Organism name:
Azadirachta indica (eudicots)
Infraspecific name:
Cultivar: GKVK
BioSample:
SAMN02715695
BioProject:
PRJNA176672
Submitter:
Centre for Cellular and Molecular Plateforms
Date:
2015/06/16
Release type:
minor
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000439995.3 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AMWY02
Assembly method:
Velvet v. 1.2.07; MIRA v. 3.4.0.2; cd-hit-est v. 4.5.4
Expected final version:
no
Genome coverage:
21.0x nuclear; 196.0x chloroplast; 587.0x mitochondrion
Sequencing technology:
Illumina HiSeq

IDs: 351231 [UID] 1820218 [GenBank]

See Genome Information for Azadirachta indica

History (Show revision history)

Comment

In June 2015 chloroplast sequences (AMWY02125536-AMWY02125700) and mitochondrial sequences (AMWY02125701-AMWY02126142) were added to this 02 version of AMWY00000000.

Global statistics

Total sequence length261,457,759
Total ungapped length261,457,759
Number of contigs126,142
Contig N503,491
Contig L5019,221
Total number of chromosomes and plasmids2
Number of component sequences (WGS or clone)126,142

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_000440005.3)

This assembly-unit does not have any assembled chromosomes or linkage groups. Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
All261,121,960125,535261,121,9603,49700
MoleculeSequence RoleTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule335,799607335,79972100
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds237,2230237,2234420442237,2230237,2237050705000000
Chloroplast PltdAllAssembled moleculeUnlocalized scaffolds98,576098,576165016598,576098,5768170817000000
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