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ASM43925v1

Organism name:
Salmonella bongori N268-08 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: N268-08
BioSample:
SAMN02603391
BioProject:
PRJNA168043
Submitter:
Institute of Food, Nutrition and Health, ETH Zurich
Date:
2013/07/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000439255.1 (latest)
RefSeq assembly accession:
GCF_000439255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRTanalysis v. 2.01
Genome coverage:
25x; 300x
Sequencing technology:
PacBio; IonTorrent; Sanger

IDs: 45371 [UID] 746158 [GenBank] 751078 [RefSeq]

See Genome Information for Salmonella bongori

There are 86 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria are available from the Swiss National Center for Enteropathogenic Bacteria and Listeria (NENT). DNA is available from the submitter's laboratory.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/27/2023 01:47:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,618
CDSs (total)::4,501
Genes (coding)::4,336
CDSs (with protein)::4,336
Genes (RNA)::117
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::86
ncRNAs::9
Pseudo Genes (total)::165
CDSs (without protein)::165
Pseudo Genes (ambiguous residues)::0 of 165
Pseudo Genes (frameshifted)::78 of 165
Pseudo Genes (incomplete)::110 of 165
Pseudo Genes (internal stop)::38 of 165
Pseudo Genes (multiple problems)::48 of 165
Pseudo Genes (short protein)::1 of 165
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,773,537
Total ungapped length4,773,537
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000439265.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006608.1=NC_021870.1
Plasmid RM1CP006609.1=NC_021871.1

Assembly statistics

MoleculeTotal
Length
All4,773,537
Chromosome 4,683,551
Plasmid RM189,986

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella bongori N268-08Salmonella bongori

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000252995.1Salmonella bongori NCTC 12419type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000252995.1Salmonella bongoritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3690.4996.84
Best-match type99.3690.4996.84

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna