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ASM43012v1

Organism name:
Salmonella enterica subsp. enterica serovar Cubana str. CFSAN002050 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Serovar: Cubana
Infraspecific name:
Strain: CFSAN002050
BioSample:
SAMN01832088
BioProject:
PRJNA184141
Submitter:
FDA
Date:
2013/07/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000430125.1 (latest)
RefSeq assembly accession:
GCF_000430125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. 7
Genome coverage:
90X
Sequencing technology:
PacBio RS

IDs: 41131 [UID] 737358 [GenBank] 751098 [RefSeq]

See Genome Information for Salmonella enterica

There are 534783 assemblies for this organism

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History (Show revision history)

Comment

Bacterial culture available from Dwayne Roberson, FDA College Park Campus, 5100 Paint Branch Parkway, College Park, MD 20740.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000430125.1-RS_2024_05_26
Annotation Date::05/26/2024 02:00:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,160
CDSs (total)::5,038
Genes (coding)::4,908
CDSs (with protein)::4,908
Genes (RNA)::122
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::85
ncRNAs::15
Pseudo Genes (total)::130
CDSs (without protein)::130
Pseudo Genes (ambiguous residues)::0 of 130
Pseudo Genes (frameshifted)::49 of 130
Pseudo Genes (incomplete)::91 of 130
Pseudo Genes (internal stop)::29 of 130
Pseudo Genes (multiple problems)::33 of 130
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,267,011
Total ungapped length5,267,011
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000430135.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006055.1=NC_021818.1
Plasmid unnamedCP006056.1=NC_021845.1
Plasmid unnamed2CP006057.1=NC_021819.1

Assembly statistics

MoleculeTotal
Length
All5,267,011
Chromosome 4,977,480
Plasmid unnamed166,668
Plasmid unnamed2122,863

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Cubana str. CFSAN002050Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000006945.2Salmonella enterica subsp. enterica serovar Typhimurium str. LT2type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000006945.2Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7384.3789.75
Best-match type98.7384.3789.75

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna