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ASM42970v1

Organism name:
Alteribacter aurantiacus DSM 18675 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 18675
BioSample:
SAMN02441191
BioProject:
PRJNA185559
Submitter:
DOE Joint Genome Institute
Date:
2013/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000429705.1 (latest)
RefSeq assembly accession:
GCF_000429705.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AUCJ01
Assembly method:
Unknown program v. before 2013-03-26
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 62141 [UID] 778648 [GenBank] 1110868 [RefSeq]

See Genome Information for Alteribacter aurantiacus

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1012043
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The ... JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
collection_date::MAY 2003
country::Hungary
environment::Soda lakes; Sediment
investigation_type::bacteria_archaea
isol_growth_condt::18398180
lat_lon::46.799119 19.1821
project_name::Bacillus aurantiacus DSM 18675
sequencing_meth::WGS
ref_biomaterial::DSM 18675
rel_to_oxygen::Aerobe
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gi11183
Type Strain::Yes
Funding Program::DOE-CSP 2012
Isolation Site::Sediment
Cell Shape::Rod-shaped
Motility::Nonmotile
Sporulation::Sporulating
Temperature Range::Mesophile
Temperature Optimum::28 C
pH::8-12
Gram Staining::Gram+
Phenotypes::Catalase positive
##MIGS-Data-END##

Global statistics

Total sequence length4,023,079
Total ungapped length4,022,553
Gaps between scaffolds0
Number of scaffolds12
Scaffold N502,326,123
Scaffold L501
Number of contigs16
Contig N50601,343
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)15

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,023,079124,022,5532,326,12340

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Alteribacter aurantiacus DSM 18675Alteribacter aurantiacus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003710255.1Alteribacter keqinensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.0120.4419.68

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected