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ASM42308v1

Organism name:
Granulicoccus phenolivorans DSM 17626 = NBRC 107789 = JCM 15570 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 17626
BioSample:
SAMN02440835
BioProject:
PRJNA185623
Submitter:
DOE Joint Genome Institute
Date:
2013/07/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000423085.1 (latest)
RefSeq assembly accession:
GCF_000423085.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AUHH01
Assembly method:
Unknown program v. before 2013-03-06
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 59041 [UID] 775458 [GenBank] 1114048 [RefSeq]

See Genome Information for Granulicoccus phenolivorans

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1012055
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The ... JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
country::Singapore
environment::Wastewater
investigation_type::bacteria_archaea
isol_growth_condt::17392196
project_name::Granulicoccus phenolivorans DSM 17626
sequencing_meth::WGS
ref_biomaterial::DSM 17626
rel_to_oxygen::Facultative
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gi11543
Type Strain::Yes
Funding Program::DOE-CSP 2012
Isolation Site::Phenol-degrading aerobic granules
Cell Shape::Coccus-shaped
Motility::Nonmotile
Sporulation::Nonsporulating
Temperature Range::Mesophile
Temperature Optimum::30 C
pH::5.0-8.5
Gram Staining::Gram+
Phenotypes::Catalase positive
##MIGS-Data-END##

Global statistics

Total sequence length4,117,723
Total ungapped length4,112,232
Gaps between scaffolds0
Number of scaffolds74
Scaffold N5088,652
Scaffold L5013
Number of contigs83
Contig N5082,277
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)81

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,117,723744,112,23288,65290

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Granulicoccus phenolivorans DSM 17626 = NBRC 107789 = JCM 15570Granulicoccus phenolivorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001552335.1Granulicoccus phenolivorans DSM 17626 = NBRC 107789 = JCM 15570type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001552335.1Granulicoccus phenolivoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9998.3799.57
Best-match type99.9998.3799.57

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna