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ASM42288v1

Organism name:
Ottowia thiooxydans DSM 14619 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:14619
Infraspecific name:
Strain: DSM 14619
BioSample:
SAMN02441165
BioProject:
PRJNA185610
Submitter:
DOE Joint Genome Institute
Date:
2013/07/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000422885.1 (latest)
RefSeq assembly accession:
GCF_000422885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AUGX01
Assembly method:
Unknown program v. before 2013-04-04
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 58941 [UID] 775358 [GenBank] 1126318 [RefSeq]

See Genome Information for Ottowia thiooxydans

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1008583
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The ... JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
collection_date::1994
country::Germany
environment::Sludge; Wastewater
investigation_type::bacteria_archaea
isol_growth_condt::14742465
lat_lon::48.2152 11.6316
project_name::Ottowia thiooxydans DSM 14619
sequencing_meth::WGS
ref_biomaterial::DSM 14619
rel_to_oxygen::Facultative
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gi11726
Type Strain::Yes
Funding Program::DOE-CSP 2012
Isolation Site::Activated sludge
Cell Shape::Rod-shaped
Motility::Nonmotile
Sporulation::Nonsporulating
Temperature Range::Psychrotolerant
Temperature Optimum::25-27 C
pH::5.6-9.8
Gram Staining::Gram-
Phenotypes::Catalase positive
##MIGS-Data-END##

Global statistics

Total sequence length7,048,723
Total ungapped length7,044,342
Gaps between scaffolds0
Number of scaffolds79
Scaffold N50263,608
Scaffold L508
Number of contigs90
Contig N50263,608
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)87

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,048,723797,044,342263,608110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ottowia thiooxydans DSM 14619Ottowia thiooxydans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_028680575.1Acidovorax benzenivoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.201.822.33

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected