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ASM38590v1

Organism name:
Salmonella enterica subsp. enterica serovar Typhi str. Ty21a (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Serovar: Typhi
Infraspecific name:
Strain: Ty21a
BioSample:
SAMN02603210
BioProject:
PRJNA34855
Submitter:
Division of Bacterial, Parasitic and Allergenic Products, LESTD, FDA-CBER, USA
Date:
2013/05/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000385905.1 (latest)
RefSeq assembly accession:
GCF_000385905.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 653508 [UID] 643498 [GenBank] 653508 [RefSeq]

See Genome Information for Salmonella enterica

There are 534421 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/14/2023 01:13:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,708
CDSs (total)::4,597
Genes (coding)::4,268
CDSs (with protein)::4,268
Genes (RNA)::111
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::79
ncRNAs::10
Pseudo Genes (total)::329
CDSs (without protein)::329
Pseudo Genes (ambiguous residues)::0 of 329
Pseudo Genes (frameshifted)::158 of 329
Pseudo Genes (incomplete)::110 of 329
Pseudo Genes (internal stop)::118 of 329
Pseudo Genes (multiple problems)::50 of 329
Pseudo Genes (short protein)::1 of 329
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,791,958
Total ungapped length4,791,958
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000385915.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002099.1=NC_021176.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,791,958

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Typhi str. Ty21aSalmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_010191885.1Salmonella enterica subsp. enterica serovar Typhimuriumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010191885.1Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5089.1187.69
Best-match type98.5089.1187.69

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna