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ASM37376v1

Organism name:
Legionella shakespearei DSM 23087 (g-proteobacteria)
Infraspecific name:
Strain: DSM 23087
BioSample:
SAMN02440432
BioProject:
PRJNA169766
Submitter:
DOE Joint Genome Institute
Date:
2013/04/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000373765.1 (latest)
RefSeq assembly accession:
GCF_000373765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AREN01
Assembly method:
Velvet v. 1.1.04; ALLPATHS v. r41043
Genome coverage:
Unknown
Sequencing technology:
Illumina

IDs: 636218 [UID] 603648 [GenBank] 636218 [RefSeq]

See Genome Information for Legionella shakespearei

There are 2 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 405822
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by JGI-PGF ... and JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

Global statistics

Total sequence length3,512,682
Total ungapped length3,507,313
Gaps between scaffolds0
Number of scaffolds57
Scaffold N50110,354
Scaffold L509
Number of contigs70
Contig N50100,276
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)70

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,512,682573,507,313110,354130
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