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Acin_sp_NIPH_542_V1

Organism name:
Acinetobacter sp. NIPH 542 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NIPH 542
BioSample:
SAMN01828128
BioProject:
PRJNA183224
Submitter:
Broad Institute
Date:
2013/04/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000369825.1 (latest)
RefSeq assembly accession:
GCF_000369825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
APSC01
Assembly method:
allpaths v. R43388
Genome coverage:
83.0x
Sequencing technology:
Illumina

IDs: 670618 [UID] 596778 [GenBank] 670618 [RefSeq]

See Genome Information for Acinetobacter sp. NIPH 542

Pathogen Detection Resources

History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length4,176,391
Total ungapped length4,174,669
Gaps between scaffolds0
Number of scaffolds8
Scaffold N502,509,746
Scaffold L501
Number of contigs13
Contig N50572,295
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)13

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,176,39184,174,6692,509,74650

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter sp. NIPH 542Acinetobacter sp. NIPH 542

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000196795.1Acinetobacter oleivoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.8889.0689.54

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna