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Saccharomyces cerevisiae M3838 v1.0

Organism name:
Saccharomyces cerevisiae M3838 (baker's yeast)
Infraspecific name:
Strain: M3838
BioSample:
SAMN02769633
BioProject:
PRJNA174691
Submitter:
DOE Joint Genome Institute
Date:
2013/04/17
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000365105.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AMQE01
Assembly method:
Allpaths-LG v. R41043
Genome coverage:
95.6x
Sequencing technology:
Illumina

IDs: 608008 [UID] 608008 [GenBank]

See Genome Information for Saccharomyces cerevisiae

There are 787 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://genome.jgi.doe.gov/SacceM3838_1
JGI Project ID: 408874
The DNA was provided by Allan Froehlich (afroehlich@mascoma.com)
The strain is available from Allan Froehlich
Contacts: Alan Kuo (akuo@lbl.gov)
Assembly and annotation done by JGI.
The JGI and collaborators endorse the principles for the distribution and use of ... large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length11,571,570
Total ungapped length11,521,811
Gaps between scaffolds0
Number of scaffolds34
Scaffold N50683,967
Scaffold L507
Number of contigs84
Contig N50355,957
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)84

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced11,571,5703411,521,811683,967500
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