U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Cherry1.0

  • Anomalous assembly.
Organism name:
Agrobacterium tumefaciens str. Cherry 2E-2-2 (Agrobacterium genomosp. 1)
Taxonomy check:
Failed
Infraspecific name:
Strain: Cherry 2E-2-2
BioSample:
SAMN02471712
BioProject:
PRJNA186406
Submitter:
University of Delhi
Date:
2013/03/29
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_000349865.1 (latest)
RefSeq assembly accession:
GCF_000349865.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
APCC01
Assembly method:
Velvet v. 1.2.03
Genome coverage:
86x
Sequencing technology:
Illumina

IDs: 574638 [UID] 565388 [GenBank] 574638 [RefSeq]

See Genome Information for Agrobacterium tumefaciens

There are 259 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from: Prof. Rup Lal, Molecular Biology Laboratory, University of Delhi, Chattra Marg, Delhi, Delhi 110007, India
Bacteria available from: Prof. Rup Lal, Molecular Biology Laboratory, University of Delhi, Chattra Marg, Delhi, Delhi 110007, India.

Annotation was added by the ... NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.  more

Global statistics

Total sequence length5,425,293
Total ungapped length5,425,293
Number of contigs112
Contig N5098,650
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)112

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,425,2931125,425,29398,65000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Agrobacterium tumefaciens str. Cherry 2E-2-2Agrobacterium tumefaciens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_011684035.1Agrobacterium tumefacienssuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_015704895.1Agrobacterium leguminumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type87.6273.4167.42
Best-match type96.4284.6983.98

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna