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ASM34984v1

Organism name:
Pseudomonas sp. ATCC 13867 (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ATCC 13867
BioSample:
SAMN02603735
BioProject:
PRJNA189431
Submitter:
Pusan National University
Date:
2013/03/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000349845.1 (latest)
RefSeq assembly accession:
GCF_000349845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6
Genome coverage:
45.78x
Sequencing technology:
454 GS FLX Titanium

IDs: 565578 [UID] 562288 [GenBank] 565578 [RefSeq]

See Genome Information for Pseudomonas sp. ATCC 13867

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/24/2021 11:43:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,152
CDSs (total)::5,069
Genes (coding)::5,021
CDSs (with protein)::5,021
Genes (RNA)::83
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::63
ncRNAs::4
Pseudo Genes (total)::48
CDSs (without protein)::48
Pseudo Genes (ambiguous residues)::0 of 48
Pseudo Genes (frameshifted)::19 of 48
Pseudo Genes (incomplete)::31 of 48
Pseudo Genes (internal stop)::4 of 48
Pseudo Genes (multiple problems)::6 of 48
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,696,307
Total ungapped length5,696,307
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000349855.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP004143.1=NC_020829.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,696,307

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas sp. ATCC 13867Pseudomonas sp. ATCC 13867

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010994165.1Pseudomonas nitritireducenssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.0874.4766.31

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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