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Anop_albi_ALBI9_A_V2

Organism name:
Anopheles albimanus (mosquitos)
Infraspecific name:
Strain: ALBI9_A
BioSample:
SAMN02953839
BioProject:
PRJNA191561
Submitter:
Broad Institute
Date:
2017/08/01
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000349125.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
APCK01
Assembly method:
allpaths v. R43019
Genome coverage:
95.0x
Sequencing technology:
Illumina

IDs: 1163571 [UID] 4896688 [GenBank]

See Genome Information for Anopheles albimanus

History (Show revision history)

Comment

VectorBase (www.vectorbase.org), a NIAID Bioinformatics Resource Center, is responsible for the assembled genome sequence and its annotation. For more information, contact info@vectorbase.org.

In assembly version Anop_albi_ALBI9_A_V2, contig APCK01000384 was replaced by contigs APCK01002861-APCK01002862.

Global statistics

Total sequence length173,339,239
Total assembly gap length9,844,765
Gaps between scaffolds35
Number of scaffolds236
Scaffold N509,735,467
Scaffold L505
Number of contigs2,861
Contig N50200,121
Contig L50241
Total number of chromosomes and plasmids5
Number of component sequences (WGS or clone)2,861

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000349135.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2LCM008152.1n/an/a0
Chromosome 2RCM008153.1n/an/a0
Chromosome 3LCM008154.1n/an/a0
Chromosome 3RCM008155.1n/an/a0
Chromosome XCM008156.1n/an/a0
unplacedn/an/an/a196

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All173,339,239236163,494,4749,735,4672,62535
Chromosome 2L37,976,048336,974,21822,635,1834422
Chromosome 2R51,801,7581550,041,3315,915,39756214
Chromosome 3L33,601,328432,723,10730,179,3213623
Chromosome 3R34,682,0021231,529,70118,068,49947311
Chromosome X12,318,379610,836,6168,610,2544985
unplaced2,959,7241961,389,50194,6282880
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