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ASM34856v1

Organism name:
Edwardsiella piscicida C07-087 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: C07-087
BioSample:
SAMN02603613
BioProject:
PRJNA187997
Submitter:
Mississippi State University
Date:
2013/03/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000348565.1 (latest)
RefSeq assembly accession:
GCF_000348565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
CLC Genomic workbench from CLC Bio, v. 5.0.1
Genome coverage:
175x
Sequencing technology:
454 GS FLX Titanium, Illumina GA IIX

IDs: 561518 [UID] 560708 [GenBank] 561518 [RefSeq]

See Genome Information for Edwardsiella piscicida

There are 19 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.
Reference-guided gap closure based ... on Edwardsiella tarda EIB202 deposited in NC_013508.1 and Edwardsiella tarda FL6-60 deposited in INSD Accession Number CP002154.1
Bacteria available from Dr. Mark Lawrence (lawrence@cvm.msstate.edu)  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/17/2021 12:00:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,545
CDSs (total)::3,420
Genes (coding)::3,387
CDSs (with protein)::3,387
Genes (RNA)::125
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::95
ncRNAs::5
Pseudo Genes (total)::33
CDSs (without protein)::33
Pseudo Genes (ambiguous residues)::0 of 33
Pseudo Genes (frameshifted)::16 of 33
Pseudo Genes (incomplete)::20 of 33
Pseudo Genes (internal stop)::8 of 33
Pseudo Genes (multiple problems)::8 of 33
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,857,040
Total ungapped length3,857,040
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000348575.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP004141.1=NC_020796.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,857,040

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Edwardsiella piscicida C07-087Edwardsiella piscicida

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001896205.1Edwardsiella piscicidareftype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001896205.1Edwardsiella piscicidareftype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5992.7493.73
Best-match type99.5992.7493.73

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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