Format

Send to:

Choose Destination

Download Assembly



Ccap_1.1

Organism name:
Ceratitis capitata (Mediterranean fruit fly)
BioSample:
SAMN02953830
BioProject:
PRJNA168120
Submitter:
The i5k Initiative
Date:
2013/03/21
Release type:
minor
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000347755.2 (replaced)
RefSeq assembly accession:
GCF_000347755.2 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AOHK01
Assembly method:
AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2
Genome coverage:
152.5x
Sequencing technology:
Illumina HiSeq

IDs: 576981 [UID] 2571028 [GenBank] 2571048 [RefSeq]

See Genome Information for Ceratitis capitata

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

DNA was provided by the laboratory of Dr. Giuliano Gasperi laboratory of Insect Molecular Biology at the University of Pavia, Italy

Global statistics

Total sequence length479,047,742
Total ungapped length435,578,652
Gaps between scaffolds0
Number of scaffolds1,806
Scaffold N504,118,346
Scaffold L5034
Number of contigs25,233
Contig N5045,879
Contig L502,507
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)25,233

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced479,031,7621,805435,562,6724,118,34623,4270
MoleculeTotal
Length
Mitochondrion MT15,980
Support Center