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Ccap_1.0

Organism name:
Ceratitis capitata (Mediterranean fruit fly)
BioSample:
SAMN02953830
Submitter:
The i5k Initiative
Date:
2013/03/21
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000347755.1 (replaced)
RefSeq assembly accession:
GCF_000347755.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
AOHK01
Assembly method:
AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2
Genome coverage:
152.5x
Sequencing technology:
Illumina HiSeq

IDs: 559148 [UID] 559148 [GenBank] 653318 [RefSeq]

See Genome Information for Ceratitis capitata

History (Show revision history)

Comment

DNA was provided by the laboratory of Dr. Giuliano Gasperi laboratory of Insect Molecular Biology at the University of Pavia, Italy

Global statistics

Total sequence length484,789,472
Total assembly gap length44,069,776
Gaps between scaffolds0
Number of scaffolds1,824
Scaffold N504,060,615
Scaffold L5035
Number of contigs25,561
Contig N5045,711
Contig L502,547
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced484,773,4921,823440,703,7164,060,61523,7370
MoleculeTotal
Length
Mitochondrion MT15,980
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