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ASM34733v2

Organism name:
Aegilops tauschii (monocots)
Infraspecific name:
Cultivar: AL8/78
BioSample:
SAMN03004387
BioProject:
PRJNA182898
Submitter:
BGI
Date:
2017/10/25
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000347335.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AOCO02
Assembly method:
DenovoMAGIC v. 2.0
Expected final version:
yes
Genome coverage:
196.81x
Sequencing technology:
Illumina HiSeq; PacBio

IDs: 1412271 [UID] 5572138 [GenBank]

See Genome Information for Aegilops tauschii

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,310,349,319
Total ungapped length4,188,713,606
Gaps between scaffolds436
Number of scaffolds112,210
Scaffold N5012,088,055
Scaffold L5096
Number of contigs187,307
Contig N50121,249
Contig L5010,316
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)112,210

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000347345.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM008423.1n/an/a5
Chromosome 2CM008424.1n/an/a14
Chromosome 3CM008425.1n/an/a7
Chromosome 4CM008426.1n/an/a9
Chromosome 5CM008427.1n/an/a9
Chromosome 6CM008428.1n/an/a7
Chromosome 7CM008429.1n/an/a18
unplacedn/an/an/a111,698

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule4,310,349,319112,2104,188,713,60612,088,05575,097436
Chromosome 1AllAssembled moleculeUnlocalized scaffolds501,635,333492,061,0289,574,30575705495,876,347486,457,8279,418,52011,635,04911,635,0492,222,4048,0787,86821069690
Chromosome 2AllAssembled moleculeUnlocalized scaffolds623,045,422561,232,40861,813,014746014616,415,741555,207,19461,208,54715,617,04516,849,5776,290,6489,8158,95486159590
Chromosome 3AllAssembled moleculeUnlocalized scaffolds595,034,782517,722,04577,312,73763567588,452,843511,832,85376,619,99022,378,36320,572,54829,737,2999,4868,4051,08155550
Chromosome 4AllAssembled moleculeUnlocalized scaffolds519,093,267418,868,640100,224,62760519513,831,859414,493,86199,337,99815,922,61214,721,38815,922,6127,3146,0121,30250500
Chromosome 5AllAssembled moleculeUnlocalized scaffolds554,597,478456,583,79798,013,68167589548,453,318451,284,30197,169,01718,402,98718,554,80218,402,9878,8867,5891,29757570
Chromosome 6AllAssembled moleculeUnlocalized scaffolds480,270,911371,271,057108,999,85463567475,291,643367,209,500108,082,14312,120,20611,532,03725,914,8887,4736,0771,39655550
Chromosome 7AllAssembled moleculeUnlocalized scaffolds611,906,174473,654,065138,252,1091109218603,811,033466,963,871136,847,1629,738,8369,379,50911,994,57510,6308,7691,86191910
unplacedAssembled molecule424,765,952111,698346,580,82238,18613,4150
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