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ASM34727v3

Organism name:
Cicer arietinum (chickpea)
Infraspecific name:
Cultivar: ICC4958
BioSample:
SAMN03105794
BioProject:
PRJNA78951
Submitter:
National Institute of Plant Genome Research
Date:
2017/06/01
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000347275.3 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AHII02
Assembly method:
Newbler v. 2.5.3; ABySS v. 1.3.5
Genome coverage:
15.0x
Sequencing technology:
454; Illumina GAIIx

IDs: 1116161 [UID] 4541798 [GenBank]

See Genome Information for Cicer arietinum

There are 3 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length510,877,095
Total ungapped length466,535,090
Gaps between scaffolds4,465
Number of scaffolds42,976
Scaffold N5074,024
Scaffold L501,568
Number of contigs75,035
Contig N5021,704
Contig L504,980
Total number of chromosomes and plasmids8
Number of component sequences (WGS or clone)42,976

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000347285.3)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome Ca1CM003628.2n/an/a0
Chromosome Ca2CM003629.2n/an/a0
Chromosome Ca3CM003630.2n/an/a0
Chromosome Ca4CM003631.2n/an/a0
Chromosome Ca5CM003632.2n/an/a0
Chromosome Ca6CM003633.2n/an/a0
Chromosome Ca7CM003634.2n/an/a0
Chromosome Ca8CM003635.2n/an/a0
unplacedn/an/an/a38,503

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All510,877,09542,976466,535,09074,02432,0594,465
Chromosome Ca139,901,01749836,613,715145,6041,170497
Chromosome Ca233,233,45748630,002,977108,2121,080485
Chromosome Ca342,267,54254538,791,501147,5741,300544
Chromosome Ca454,992,81571850,238,655144,2961,749717
Chromosome Ca545,819,70161541,700,725135,9701,454614
Chromosome Ca654,841,38977950,032,880127,1481,677778
Chromosome Ca745,279,47860141,493,984132,0421,344600
Chromosome Ca817,664,08923116,205,850144,381526230
unplaced176,877,60738,503161,454,8039,71621,7590
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