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ASM34659v1

Organism name:
Candidatus Liberibacter asiaticus str. gxpsy (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: gxpsy
BioSample:
SAMN02604078
BioProject:
PRJNA158395
Submitter:
United States Department of Agriculture
Date:
2013/03/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000346595.1 (latest)
RefSeq assembly accession:
GCF_000346595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Velvet v. 1.1
Genome coverage:
50-80x
Sequencing technology:
Illumina HiSeq 2000 with a 300-bp paired-end library; contig gaps were closed by PCR and all amplicons were resequenced by ABI 3130

IDs: 561268 [UID] 557288 [GenBank] 561268 [RefSeq]

See Genome Information for Candidatus Liberibacter asiaticus

There are 39 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.
De novo assembly; contigs ... mapped to reference genome (Candidatis Liberibacter asiaticus psy62 INSD accession number CP001677.5)

DNA available from Hong Lin (hong.lin@ars.usda.gov)  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/06/2022 11:42:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,150
CDSs (total)::1,094
Genes (coding)::1,073
CDSs (with protein)::1,073
Genes (RNA)::56
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::44
ncRNAs::3
Pseudo Genes (total)::21
CDSs (without protein)::21
Pseudo Genes (ambiguous residues)::0 of 21
Pseudo Genes (frameshifted)::13 of 21
Pseudo Genes (incomplete)::12 of 21
Pseudo Genes (internal stop)::8 of 21
Pseudo Genes (multiple problems)::9 of 21
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,268,237
Total ungapped length1,268,237
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000346605.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP004005.1=NC_020549.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,268,237

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Liberibacter asiaticus str. gxpsyCandidatus Liberibacter asiaticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000590865.3Candidatus Liberibacter asiaticusreftype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000590865.3Candidatus Liberibacter asiaticusreftype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9196.6199.59
Best-match type99.9196.6199.59

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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