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ASM34659v1

Organism name:
Candidatus Liberibacter asiaticus str. gxpsy (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: gxpsy
BioSample:
SAMN02604078
BioProject:
PRJNA158395
Submitter:
United States Department of Agriculture
Date:
2013/03/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000346595.1 (latest)
RefSeq assembly accession:
GCF_000346595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Velvet v. 1.1
Genome coverage:
50-80x
Sequencing technology:
Illumina HiSeq 2000 with a 300-bp paired-end library; contig gaps were closed by PCR and all amplicons were resequenced by ABI 3130

IDs: 561268 [UID] 557288 [GenBank] 561268 [RefSeq]

See Genome Information for Candidatus Liberibacter asiaticus

There are 45 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/23/2023 00:34:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,155
CDSs (total)::1,099
Genes (coding)::1,078
CDSs (with protein)::1,078
Genes (RNA)::56
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::44
ncRNAs::3
Pseudo Genes (total)::21
CDSs (without protein)::21
Pseudo Genes (ambiguous residues)::0 of 21
Pseudo Genes (frameshifted)::13 of 21
Pseudo Genes (incomplete)::11 of 21
Pseudo Genes (internal stop)::8 of 21
Pseudo Genes (multiple problems)::8 of 21
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,268,237
Total ungapped length1,268,237
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000346605.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP004005.1=NC_020549.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,268,237

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Liberibacter asiaticus str. gxpsyCandidatus Liberibacter asiaticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000590865.3Candidatus Liberibacter asiaticusreftype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000590865.3Candidatus Liberibacter asiaticusreftype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9196.6199.59
Best-match type99.9196.6199.59

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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