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ASM34659v1

Organism name:
Candidatus Liberibacter asiaticus str. gxpsy (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: gxpsy
BioSample:
SAMN02604078
BioProject:
PRJNA158395
Submitter:
United States Department of Agriculture
Date:
2013/03/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000346595.1 (latest)
RefSeq assembly accession:
GCF_000346595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Velvet v. 1.1
Genome coverage:
50-80x
Sequencing technology:
Illumina HiSeq 2000 with a 300-bp paired-end library; contig gaps were closed by PCR and all amplicons were resequenced by ABI 3130

IDs: 561268 [UID] 557288 [GenBank] 561268 [RefSeq]

See Genome Information for Candidatus Liberibacter asiaticus

Pathogen Detection Resources

There are 36 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.
De novo assembly; contigs ... mapped to reference genome (Candidatis Liberibacter asiaticus psy62 INSD accession number CP001677.5)

DNA available from Hong Lin (hong.lin@ars.usda.gov)  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/30/2020 03:11:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.12
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,144
CDSs (total)::1,088
Genes (coding)::1,063
CDSs (with protein)::1,063
Genes (RNA)::56
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::44
ncRNAs::3
Pseudo Genes (total)::25
CDSs (without protein)::25
Pseudo Genes (ambiguous residues)::0 of 25
Pseudo Genes (frameshifted)::20 of 25
Pseudo Genes (incomplete)::7 of 25
Pseudo Genes (internal stop)::10 of 25
Pseudo Genes (multiple problems)::11 of 25
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,268,237
Total ungapped length1,268,237
Total number of chromosomes and plasmids1

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Assembly Information

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PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000346605.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP004005.1=NC_020549.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,268,237
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