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S_lycopersicum_mitochondrion_v1.5

Organism name:
Solanum lycopersicum (tomato)
Infraspecific name:
Cultivar: Heinz 1706
BioSample:
SAMN02981358
BioProject:
PRJNA67471
Submitter:
Mitochondrial Genome
Date:
2012/02/24
Assembly level:
Scaffold
Genome representation:
partial
Excluded from RefSeq:
  • partial
GenBank assembly accession:
GCA_000325825.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AFYB01
Assembly method:
Cap3
Genome coverage:
9x
Sequencing technology:
ABI3100, 3130 and 3730; 454 GS-FLX Titanium

IDs: 512708 [UID] 512708 [GenBank]

See Genome Information for Solanum lycopersicum

There are 5 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length575,198
Total assembly gap length134
Gaps between scaffolds0
Number of scaffolds195
Scaffold N507,789
Scaffold L5018
Number of contigs200
Contig N507,789
Contig L5018
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)195

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly (non-nuclear)
Assembly Unit: Primary Assembly (non-nuclear) (GCA_000325835.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Mitochondrion MTn/an/an/a195

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds575,1980575,1981950195575,0640575,0647,78907,789505000
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