U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM32574v1

Organism name:
Liberibacter crescens BT-1 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BT-1
BioSample:
SAMN02604174
BioProject:
PRJNA171392
Submitter:
University of Florida
Date:
2012/12/19
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000325745.1 (latest)
RefSeq assembly accession:
GCF_000325745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 513938 [UID] 512658 [GenBank] 513938 [RefSeq]

See Genome Information for Liberibacter crescens

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/11/2022 15:54:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,375
CDSs (total)::1,316
Genes (coding)::1,246
CDSs (with protein)::1,246
Genes (RNA)::59
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::46
ncRNAs::4
Pseudo Genes (total)::70
CDSs (without protein)::70
Pseudo Genes (ambiguous residues)::0 of 70
Pseudo Genes (frameshifted)::44 of 70
Pseudo Genes (incomplete)::25 of 70
Pseudo Genes (internal stop)::8 of 70
Pseudo Genes (multiple problems)::6 of 70
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,504,659
Total ungapped length1,504,659
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000325755.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003789.1=NC_019907.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,504,659

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Liberibacter crescens BT-1Liberibacter crescens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000590865.3Candidatus Liberibacter asiaticusreftype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.500.320.40

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected
Support Center