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ASM30837v1

Organism name:
Nocardia aobensis NBRC 100429 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 100429
BioSample:
SAMD00041780
BioProject:
PRJDB116
Submitter:
National Institute of Technology and Evaluation
Date:
2012/07/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000308375.1 (latest)
RefSeq assembly accession:
GCF_000308375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BAFQ01
Assembly method:
Newbler v. 2.6
Genome coverage:
77x
Sequencing technology:
454 GS-FLX Titanium; Illumina HiSeq 1000

IDs: 639858 [UID] 450658 [GenBank] 639858 [RefSeq]

See Genome Information for Nocardia aobensis

History (Show revision history)

Comment


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Global statistics

Total sequence length7,548,062
Total ungapped length7,548,062
Number of contigs298
Contig N5049,166
Contig L5050
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)298

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,548,0622987,548,06249,16600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nocardia aobensis NBRC 100429Nocardia aobensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001612965.1Nocardia kruczakiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.9483.8086.36

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected