U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

ASM30781v1

Organism name:
Helicobacter pylori Rif1 (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Rif1
BioSample:
SAMN02603762
BioProject:
PRJNA175544
Submitter:
RIPCM
Date:
2012/10/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000307815.1 (latest)
RefSeq assembly accession:
GCF_000307815.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 449938 [UID] 448798 [GenBank] 449938 [RefSeq]

See Genome Information for Helicobacter pylori

There are 3353 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.
Bacteria available from Govorun ... Lab, RIPCM (Malaya Pirogovskaya 1a, Moscow, RU), Dmitriy Alexeev, exappeal@gmail.com  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/29/2022 03:09:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,595
CDSs (total)::1,550
Genes (coding)::1,448
CDSs (with protein)::1,448
Genes (RNA)::45
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::36
ncRNAs::3
Pseudo Genes (total)::102
CDSs (without protein)::102
Pseudo Genes (ambiguous residues)::0 of 102
Pseudo Genes (frameshifted)::74 of 102
Pseudo Genes (incomplete)::28 of 102
Pseudo Genes (internal stop)::15 of 102
Pseudo Genes (multiple problems)::15 of 102
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,667,883
Total ungapped length1,667,883
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000307825.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003905.1=NC_018937.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,667,883

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Helicobacter pylori Rif1Helicobacter pylori

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003050665.1Helicobacter pyloritype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003050665.1Helicobacter pyloritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.6892.3291.61
Best-match type95.6892.3291.61

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
Support Center