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ASM29991v1

Organism name:
Gallaecimonas xiamenensis 3-C-1 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 3-C-1
BioSample:
SAMN02471169
BioProject:
PRJNA170514
Submitter:
The Third Institute of State Oceanic Administration (SOA)
Date:
2012/09/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000299915.1 (latest)
RefSeq assembly accession:
GCF_000299915.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AMRI01
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
267x
Sequencing technology:
Illumina GA IIX

IDs: 439238 [UID] 428028 [GenBank] 439238 [RefSeq]

See Genome Information for Gallaecimonas xiamenensis

Pathogen Detection Resources

History (Show revision history)

Comment

Bacteria available from Dr. Zongze Shao: The Third Institute of State Oceanic Administration (SOA), Daxue Road 184#, Xiamen 361005, Fujian, P.R. China or from MCCC (Marine Culture Collection of China) sample MCCC 1A01354.
Annotation was added by the NCBI Prokaryotic ... Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.  more

Global statistics

Total sequence length4,062,282
Total ungapped length4,062,282
Number of contigs66
Contig N50134,983
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)66

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,062,282664,062,282134,98300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gallaecimonas xiamenensis 3-C-1Gallaecimonas xiamenensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003751625.1Gallaecimonas pentaromativoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.0249.6848.16

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected