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Pm_DSM120

Organism name:
Magnetospirillum molischianum DSM 120 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 120
BioSample:
SAMEA2272023
BioProject:
PRJEA84415
Submitter:
CNRS
Date:
2012/03/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000294655.1 (latest)
RefSeq assembly accession:
GCF_000294655.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAHP01

IDs: 421168 [UID] 420648 [GenBank] 421168 [RefSeq]

See Genome Information for Magnetospirillum molischianum

History (Show revision history)

Comment

Annotation results relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM, PsortB and SignalP predictions, and synteny conservation (Syntonizer software) are available in the MicroScope annotation platform
http://www.genoscope.cns.fr/agc/microscope.

Global statistics

Total sequence length3,805,617
Total ungapped length3,805,617
Number of contigs61
Contig N50142,607
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)61

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,805,617613,805,617142,60700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Magnetospirillum molischianum DSM 120Magnetospirillum molischianum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000829825.1Paramagnetospirillum magnetotacticumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.855.324.47

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected