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ASM27670v2

Organism name:
Klebsiella michiganensis E718 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: E718
BioSample:
SAMN02603642
BioProject:
PRJNA167370
Submitter:
National Chung Hsing University
Date:
2012/07/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000276705.2 (latest)
RefSeq assembly accession:
GCF_000276705.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 707628 [UID] 707608 [GenBank] 707628 [RefSeq]

See Genome Information for Klebsiella michiganensis

There are 1010 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from "Klebsiella oxytoca" to "Klebsiella michiganensis" in July 2016.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 06:11:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,341
CDSs (total)::6,224
Genes (coding)::5,968
CDSs (with protein)::5,968
Genes (RNA)::117
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::84
ncRNAs::8
Pseudo Genes (total)::256
CDSs (without protein)::256
Pseudo Genes (ambiguous residues)::0 of 256
Pseudo Genes (frameshifted)::132 of 256
Pseudo Genes (incomplete)::135 of 256
Pseudo Genes (internal stop)::25 of 256
Pseudo Genes (multiple problems)::29 of 256
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_000276705.2
Current Name::Klebsiella michiganensis
Previous Name::Klebsiella oxytoca
Date Updated::2016-07-08
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. PROXYTYPE genome for current name
A1 Genome (subject)::GCA_000633235.1
A1 Name::Klebsiella michiganensis
A1 ANI::98.91457%
A1 Query Coverage::81%
A1 Subject Coverage::91%
Analysis 2 (A2)::Query vs. PROXYTYPE genome for previous name
A2 Genome (subject)::GCA_000507385.1
A2 Name::Klebsiella oxytoca
A2 ANI::92.5518%
A2 Query Coverage::75%
A2 Subject Coverage::85%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length6,561,678
Total ungapped length6,561,678
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000276715.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003683.1=NC_018106.1
Plasmid pKOX_NDM1JQ314407.1=NC_021501.1
Plasmid pKOX_R1CP003684.1=NC_018107.1

Assembly statistics

MoleculeTotal
Length
All6,561,678
Chromosome 6,097,032
Plasmid pKOX_NDM1110,781
Plasmid pKOX_R1353,865

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella michiganensis E718Klebsiella michiganensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002925905.1Klebsiella michiganensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002925905.1Klebsiella michiganensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8282.9487.88
Best-match type98.8282.9487.88

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna