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ASM27012v2

Organism name:
Pantoea ananatis AJ13355 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AJ13355
BioSample:
SAMD00060978
BioProject:
PRJDA60793
Submitter:
Ajinomoto Co.,Inc
Date:
2016/02/10
Assembly type:
na
Release type:
minor
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000270125.2 (latest)
RefSeq assembly accession:
GCF_000270125.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
14x
Sequencing technology:
Sanger

IDs: 641641 [UID] 2877998 [GenBank] 3280018 [RefSeq]

See Genome Information for Pantoea ananatis

There are 296 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/12/2024 01:26:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,510
CDSs (total)::4,394
Genes (coding)::4,259
CDSs (with protein)::4,259
Genes (RNA)::116
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::78
ncRNAs::16
Pseudo Genes (total)::135
CDSs (without protein)::135
Pseudo Genes (ambiguous residues)::0 of 135
Pseudo Genes (frameshifted)::107 of 135
Pseudo Genes (incomplete)::30 of 135
Pseudo Genes (internal stop)::16 of 135
Pseudo Genes (multiple problems)::15 of 135
Pseudo Genes (short protein)::1 of 135
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,877,279
Total ungapped length4,877,279
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000270135.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP012032.2=NC_017531.2
Plasmid pEA320AP012033.1=NC_017533.1

Assembly statistics

MoleculeTotal
Length
All4,877,279
Chromosome 4,555,535
Plasmid pEA320321,744

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pantoea ananatis AJ13355Pantoea ananatis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000661975.1Pantoea ananatis LMG 2665type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000661975.1Pantoea ananatistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2792.9591.02
Best-match type99.2792.9591.02

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna