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Source database (GenBank or RefSeq) File type

ASM27010v1

Organism name:: Escherichia coli DH1 (E. coli)
Taxonomy check:: OK
Infraspecific name:: Strain: DH1
BioSample:: SAMD00060976
BioProject:: PRJDA52077
Submitter:: Symbiotic Network Design Laboratory, Graduate School of Information Science and Technology, Osaka University
Date:: 2010/12/16
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000270105.1 (latest)
RefSeq assembly accession:: GCF_000270105.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 392138 [UID] 389078 [GenBank] 392138 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 265156 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000270105.1	=	GCF_000270105.1	ASM27010v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/12/2023 12:11:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,492
CDSs (total)::4,374
Genes (coding)::4,173
CDSs (with protein)::4,173
Genes (RNA)::118
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::84
ncRNAs::12
Pseudo Genes (total)::201
CDSs (without protein)::201
Pseudo Genes (ambiguous residues)::0 of 201
Pseudo Genes (frameshifted)::55 of 201
Pseudo Genes (incomplete)::136 of 201
Pseudo Genes (internal stop)::46 of 201
Pseudo Genes (multiple problems)::35 of 201
Pseudo Genes (short protein)::4 of 201
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,621,430
Total ungapped length	4,621,430
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.46	94.40	81.92
Best-match type	99.46	94.40	81.92

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ASM27010v1

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 265156 assemblies for this organism

History (Show revision history)

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Genome-Annotation-Data

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