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ASM26104v2

Organism name:
Serratia inhibens PRI-2C (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PRI-2C
BioSample:
SAMN02470676
BioProject:
PRJNA84283
Submitter:
NIOO-KNAW
Date:
2016/07/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000261045.2 (latest)
RefSeq assembly accession:
GCF_000261045.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
smrtanalysis v. 2.3.0.140936.p4.150482
Genome coverage:
211x
Sequencing technology:
PacBio P4C6

IDs: 769791 [UID] 3344448 [GenBank] 3350308 [RefSeq]

See Genome Information for Serratia inhibens

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA are available from Dr. Paolina Garbeva, Netherlands Institute of Ecology, Department Microbial Ecology, Droevendaalsesteeg 10, 6708 PB Wageningen, Netherlands.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be ... found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 12:02:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,143
CDSs (total)::5,022
Genes (coding)::4,923
CDSs (with protein)::4,923
Genes (RNA)::121
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::87
ncRNAs::12
Pseudo Genes (total)::99
CDSs (without protein)::99
Pseudo Genes (ambiguous residues)::0 of 99
Pseudo Genes (frameshifted)::29 of 99
Pseudo Genes (incomplete)::82 of 99
Pseudo Genes (internal stop)::13 of 99
Pseudo Genes (multiple problems)::20 of 99
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,474,685
Total ungapped length5,474,685
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000261055.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP015613.1=NZ_CP015613.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,474,685

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Serratia inhibens PRI-2CSerratia inhibens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003591175.1Serratia inhibenstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003591175.1Serratia inhibenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3690.9192.45
Best-match type99.3690.9192.45

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna