U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM26083v1

Organism name:
Imtechella halotolerans K1 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: K1
BioSample:
SAMN02469995
BioProject:
PRJNA112533
Submitter:
Institute of Microbial Technology(IMTECH)-CSIR,Sector 39A,Chandigarh,160036
Date:
2012/04/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000260835.1 (latest)
RefSeq assembly accession:
GCF_000260835.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AJJU01
Assembly method:
Velvet v. 1.2.03
Genome coverage:
800.0x
Sequencing technology:
Illumina HiSeq

IDs: 378858 [UID] 375078 [GenBank] 378858 [RefSeq]

See Genome Information for Imtechella halotolerans

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.
Bacteria and DNA are ... available from: Microbial Type Culture Collection and Gene Bank (MTCC), IMTECH, Sector 39A, Chandigarh, 160036, India.  more

Global statistics

Total sequence length3,086,951
Total ungapped length3,086,951
Number of contigs44
Contig N50337,071
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)44

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,086,951443,086,951337,07100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Imtechella halotolerans K1Imtechella halotolerans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_028743515.2Imtechella halotoleranstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_028743515.2Imtechella halotoleranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9799.13
Best-match type99.9999.9799.13

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna