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ASM25836v1

Organism name:
Salmonella enterica subsp. enterica serovar Heidelberg str. B182 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: B182
BioSample:
SAMN02603149
BioProject:
PRJNA88529
Submitter:
CNRS-UMR6290
Date:
2012/04/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000258365.1 (latest)
RefSeq assembly accession:
GCF_000258365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 377398 [UID] 368688 [GenBank] 377398 [RefSeq]

See Genome Information for Salmonella enterica

There are 533642 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000258365.1-RS_2024_03_27
Annotation Date::03/27/2024 01:25:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,668
CDSs (total)::4,547
Genes (coding)::4,349
CDSs (with protein)::4,349
Genes (RNA)::121
rRNAs::8, 6, 7 (5S, 16S, 23S)
complete rRNAs::8, 6, 7 (5S, 16S, 23S)
tRNAs::85
ncRNAs::15
Pseudo Genes (total)::198
CDSs (without protein)::198
Pseudo Genes (ambiguous residues)::1 of 198
Pseudo Genes (frameshifted)::122 of 198
Pseudo Genes (incomplete)::83 of 198
Pseudo Genes (internal stop)::29 of 198
Pseudo Genes (multiple problems)::31 of 198
Pseudo Genes (short protein)::1 of 198
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,788,046
Total ungapped length4,788,046
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000258375.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003416.1=NC_017623.1
Plasmid pB182_37CP003417.1=NC_017624.1

Assembly statistics

MoleculeTotal
Length
All4,788,046
Chromosome 4,750,465
Plasmid pB182_3737,581

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Heidelberg str. B182Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016028495.1Salmonella entericatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016028495.1Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1395.5892.10
Best-match type99.1395.5892.10

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna