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ASM25307v1

Organism name:
Mycoplasma mycoides subsp. capri LC str. 95010 (mycoplasmas)
Taxonomy check:
OK
Infraspecific name:
Strain: 95010
BioSample:
SAMEA2272808
BioProject:
PRJEA50391
Submitter:
Genoscope
Date:
2011/04/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000253075.1 (latest)
RefSeq assembly accession:
GCF_000253075.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 441428 [UID] 362788 [GenBank] 441428 [RefSeq]

See Genome Information for Mycoplasma mycoides

There are 75 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/26/2024 15:53:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::978
CDSs (total)::939
Genes (coding)::930
CDSs (with protein)::930
Genes (RNA)::39
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::30
ncRNAs::3
Pseudo Genes (total)::9
CDSs (without protein)::9
Pseudo Genes (ambiguous residues)::0 of 9
Pseudo Genes (frameshifted)::5 of 9
Pseudo Genes (incomplete)::7 of 9
Pseudo Genes (internal stop)::1 of 9
Pseudo Genes (multiple problems)::3 of 9
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,155,838
Total ungapped length1,155,838
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000253085.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome FQ377874.1=NC_015431.1
Plasmid pMmc-95010FQ790215.1=NC_015407.1

Assembly statistics

MoleculeTotal
Length
All1,155,838
Chromosome 1,153,998
Plasmid pMmc-950101,840

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycoplasma mycoides subsp. capri LC str. 95010Mycoplasma mycoides

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_018389705.1Mycoplasma mycoides subsp. capritype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_018389705.1Mycoplasma mycoidestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.9183.6993.41
Best-match type96.9183.6993.41

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna