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ASM25287v1

Organism name:
Salmonella enterica subsp. enterica serovar Typhimurium str. 798 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Serovar: Typhimurium
Infraspecific name:
Strain: 798
BioSample:
SAMN02604223
BioProject:
PRJNA66023
Submitter:
University of Minnesota
Date:
2012/03/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000252875.1 (latest)
RefSeq assembly accession:
GCF_000252875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 368468 [UID] 362568 [GenBank] 368468 [RefSeq]

See Genome Information for Salmonella enterica

There are 540268 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from Richard Isaacson, isaac015@umn.edu
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000252875.1-RS_2024_05_07
Annotation Date::05/07/2024 01:23:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,854
CDSs (total)::4,738
Genes (coding)::4,572
CDSs (with protein)::4,572
Genes (RNA)::116
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::83
ncRNAs::11
Pseudo Genes (total)::166
CDSs (without protein)::166
Pseudo Genes (ambiguous residues)::0 of 166
Pseudo Genes (frameshifted)::93 of 166
Pseudo Genes (incomplete)::77 of 166
Pseudo Genes (internal stop)::31 of 166
Pseudo Genes (multiple problems)::32 of 166
Pseudo Genes (short protein)::1 of 166
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,970,096
Total ungapped length4,970,096
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000252885.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003386.1=NC_017046.1
Plasmid p798_93CP003387.1=NC_017054.1

Assembly statistics

MoleculeTotal
Length
All4,970,096
Chromosome 4,876,219
Plasmid p798_9393,877

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Typhimurium str. 798Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000006945.2Salmonella enterica subsp. enterica serovar Typhimurium str. LT2type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000006945.2Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9298.4698.84
Best-match type99.9298.4698.84

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna