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Bos_indicus_1.0

Organism name:
Bos indicus (zebu cattle)
Infraspecific name:
Breed: Nelore
Isolate:
QUIL7308
Sex:
male
BioSample:
SAMN02953802
BioProject:
PRJNA72827
Submitter:
Genoa Biotecnologia SA
Date:
2014/11/25
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000247795.2 (latest)
RefSeq assembly accession:
GCF_000247795.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AGFL01
Assembly method:
BWA v. 0.5.9
Reference guided assembly:
GCF_000003205.2; Btau_4.0
Genome coverage:
52x
Sequencing technology:
SOLiD

IDs: 234761 [UID] 1421958 [GenBank] 3933778 [RefSeq]

See Genome Information for Bos indicus

There are 6 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,673,965,444
Total ungapped length2,475,828,999
Gaps between scaffolds0
Number of scaffolds32
Scaffold N50106,310,653
Scaffold L5011
Number of contigs253,770
Contig N5028,375
Contig L5025,227
Total number of chromosomes and plasmids32
Number of component sequences (WGS or clone)253,770

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000247805.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CM003021.1=NC_032650.1
Chromosome 2CM003022.1=NC_032651.1
Chromosome 3CM003023.1=NC_032652.1
Chromosome 4CM003024.1=NC_032653.1
Chromosome 5CM003025.1=NC_032654.1
Chromosome 6CM003026.1=NC_032655.1
Chromosome 7CM003027.1=NC_032656.1
Chromosome 8CM003028.1=NC_032657.1
Chromosome 9CM003029.1=NC_032658.1
Chromosome 10CM003030.1=NC_032659.1
Chromosome 11CM003031.1=NC_032660.1
Chromosome 12CM003032.1=NC_032661.1
Chromosome 13CM003033.1=NC_032662.1
Chromosome 14CM003034.1=NC_032663.1
Chromosome 15CM003035.1=NC_032664.1
Chromosome 16CM003036.1=NC_032665.1
Chromosome 17CM003037.1=NC_032666.1
Chromosome 18CM003038.1=NC_032667.1
Chromosome 19CM003039.1=NC_032668.1
Chromosome 20CM003040.1=NC_032669.1
Chromosome 21CM003041.1=NC_032670.1
Chromosome 22CM003042.1=NC_032671.1
Chromosome 23CM003043.1=NC_032672.1
Chromosome 24CM003044.1=NC_032673.1
Chromosome 25CM003045.1=NC_032674.1
Chromosome 26CM003046.1=NC_032675.1
Chromosome 27CM003047.1=NC_032676.1
Chromosome 28CM003048.1=NC_032677.1
Chromosome 29CM003049.1=NC_032678.1
Chromosome XCM003050.1=NC_032679.1
Chromosome YCM003051.1=NC_032680.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,673,949,103312,475,812,658106,310,653253,7380
Chromosome 1161,108,4921149,567,130161,108,49212,5920
Chromosome 2140,680,8851132,521,881140,680,88510,6880
Chromosome 3127,865,0681119,066,151127,865,0689,5980
Chromosome 4124,429,9151117,531,185124,429,91510,2200
Chromosome 5125,642,7361117,210,018125,642,73610,2670
Chromosome 6122,646,6121112,862,637122,646,6129,9150
Chromosome 7111,948,8571105,062,874111,948,8579,2910
Chromosome 8116,941,3121108,147,333116,941,3128,6100
Chromosome 9108,100,2051101,245,142108,100,2058,7490
Chromosome 10106,310,6531100,319,417106,310,6538,4560
Chromosome 11110,256,6341103,487,258110,256,6349,1680
Chromosome 1285,442,668180,551,76985,442,6687,9360
Chromosome 1384,433,108179,592,58784,433,1085,6720
Chromosome 1481,409,030177,073,99181,409,0306,3840
Chromosome 1584,800,079178,959,80384,800,0797,3580
Chromosome 1677,906,047172,218,63877,906,0476,0280
Chromosome 1776,519,027170,884,18176,519,0276,5380
Chromosome 1865,948,792160,931,35765,948,7925,9720
Chromosome 1965,317,831160,763,05665,317,8315,5090
Chromosome 2075,862,604170,655,89375,862,6046,3530
Chromosome 2169,307,409164,909,25269,307,4095,9250
Chromosome 2261,892,534158,548,53661,892,5344,6130
Chromosome 2353,331,160149,974,68053,331,1604,6480
Chromosome 2465,017,658161,084,02565,017,6585,4540
Chromosome 2544,044,299141,210,94644,044,2994,2780
Chromosome 2651,861,174148,212,02951,861,1744,4780
Chromosome 2748,749,331145,143,16648,749,3314,5690
Chromosome 2846,105,673143,040,13546,105,6733,5280
Chromosome 2952,131,593147,794,79752,131,5935,0270
Chromosome X88,516,652182,216,48688,516,65210,8730
Chromosome Y39,421,065115,026,30539,421,06535,0410
MoleculeTotal
Length
Mitochondrion MT16,341
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