U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM24327v1

Organism name:
Myroides odoratus DSM 2801 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 2801
BioSample:
SAMN02256523
BioProject:
PRJNA61389
Submitter:
DOE Joint Genome Institute
Date:
2012/01/24
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000243275.1 (latest)
RefSeq assembly accession:
GCF_000243275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AHKQ01
Assembly method:
Newbler v. 2.3
Genome coverage:
30x
Sequencing technology:
454; Illumina

IDs: 357028 [UID] 331358 [GenBank] 357028 [RefSeq]

See Genome Information for Myroides odoratus

There are 10 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 4087362
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
 David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-PGF and JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Myroides odoratus DSM 2801
collection_date::Missing
lat_lon::Missing
depth::Missing
alt_elev::Missing
country::Germany
environment::Missing
num_replicons::1
ref_biomaterial::DSM 2801, ATCC 4651, IAM 14199, JCM 7458, NCTC 11036
biotic_relationship::Free living
trophic_level::Missing
rel_to_oxygen::Anaerobe
isol_growth_condt::Missing
sequencing_meth::WGS
assembly::Newbler v. 2.3 (pre-release)
finishing_strategy::Finished
GOLD Stamp ID::Gi04621
Type Strain::Yes
Funding Program::DOE-GEBA 2009
Gene Calling Method::Prodigal 1.4, GenePRIMP
Isolation Comments::isolated by M Stutzer in 1926
Motility::Nonmotile
Temperature Range::Mesophile
Gram Staining::Gram-
##MIGS-Data-END##

Global statistics

Total sequence length4,301,842
Total ungapped length4,296,542
Gaps between scaffolds0
Number of scaffolds1
Scaffold N504,301,842
Scaffold L501
Number of contigs54
Contig N50198,887
Contig L507
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)54

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000243285.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CM001437.1=NZ_CM001437.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 4,301,84214,296,5424,301,842530

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Myroides odoratus DSM 2801Myroides odoratus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900453865.1Myroides odoratussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900453865.1Myroides odoratussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9797.6898.66
Best-match type99.9797.6898.66

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna