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Lvar_0.4

Organism name:
Lytechinus variegatus (green sea urchin)
Sex:
male
BioSample:
SAMN00205415
BioProject:
PRJNA62399
Submitter:
Baylor College of Medicine
Date:
2011/12/22
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000239495.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AGCV01
Assembly method:
CABOG (Celera Assembler); Newbler; ATLAS-Link; ATLAS-GapFill
Genome coverage:
13x 454; 21x Illumina
Sequencing technology:
454; Illumina

IDs: 322438 [UID] 322438 [GenBank]

See Genome Information for Lytechinus variegatus

History (Show revision history)

Comment

The Lytechinus variegatus draft genome sequence (Lvar_0.4) was assembled using a combination of roughly 13x 454 reads (fragment and 2.5kb insert pair ends) and roughly 21x Illumina reads (300bp insert and 2.5kb insert pair ends) at the Baylor College ... of Medicine Human Genome Sequencing Center. The 454 data was assembled using CABOG, shattered into fake reads and co-assembled with the Illumina data using Newbler. The resulting assembly was improved with ATLAS-Link and ATLAS-GapFill.  more

Global statistics

Total sequence length951,759,914
Total ungapped length823,146,813
Gaps between scaffolds0
Number of scaffolds249,725
Scaffold N5042,623
Scaffold L505,978
Number of contigs434,514
Contig N506,207
Contig L5033,511
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)434,514

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced951,759,914249,725823,146,81342,623184,7890
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