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Source database (GenBank or RefSeq) File type

ASM22660v1

Organism name:: Chlamydia trachomatis A2497 (chlamydias)
Taxonomy check:: OK
Infraspecific name:: Strain: A2497
BioSample:: SAMN02603770
BioProject:: PRJNA53575
Submitter:: Rocky Mountain Laboratory
Date:: 2011/09/28
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000226605.1 (latest)
RefSeq assembly accession:: GCF_000226605.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 373208 [UID] 305188 [GenBank] 373208 [RefSeq]

See Genome Information for Chlamydia trachomatis

Pathogen Detection Resources

There are 359 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000226605.1	=	GCF_000226605.1	ASM22660v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Contact for biological materials: Dr. Harlan D. Caldwell, Laboratory of Intracellular Pathogens, Rocky Mountain Laboratories, 903 South 4th Street, Hamilton, MT 59840 (hcaldwell@niaid.nih.gov)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be ... found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::04/09/2023 00:41:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::954
CDSs (total)::908
Genes (coding)::888
CDSs (with protein)::888
Genes (RNA)::46
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::37
ncRNAs::3
Pseudo Genes (total)::20
CDSs (without protein)::20
Pseudo Genes (ambiguous residues)::0 of 20
Pseudo Genes (frameshifted)::14 of 20
Pseudo Genes (incomplete)::1 of 20
Pseudo Genes (internal stop)::7 of 20
Pseudo Genes (multiple problems)::2 of 20
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,051,806
Total ungapped length	1,051,806
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP002401.1	=	NC_017437.1
Plasmid p0001	CP002402.1	=	NC_017438.1

Molecule	Total Length
All	1,051,806
Chromosome	1,044,326
Plasmid p0001	7,480

	ANI	Query coverage	Subject coverage
Declared type	99.86	99.99	99.98
Best-match type	99.86	99.99	99.98

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ASM22660v1

See Genome Information for Chlamydia trachomatis

Pathogen Detection Resources

There are 359 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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