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ASM22467v1

Organism name:
Enterobacter soli (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LF7a
BioSample:
SAMN02232020
BioProject:
PRJNA41509
Submitter:
DOE Joint Genome Institute
Date:
2011/08/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000224675.1 (latest)
RefSeq assembly accession:
GCF_000224675.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.3
Genome coverage:
30x
Sequencing technology:
454/Illumina

IDs: 301948 [UID] 301278 [GenBank] 301948 [RefSeq]

See Genome Information for Enterobacter soli

There are 20 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from "Enterobacter asburiae LF7a" to "Enterobacter soli" in April 2019.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4087281
Source DNA ... and organism available from Daniel van der Lelie (vdlelied@rti.org)
Contacts: Daniel van der Lelie (vdlelied@rti.org)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000224675.1-RS_2024_05_01
Annotation Date::05/01/2024 01:32:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,796
CDSs (total)::4,684
Genes (coding)::4,622
CDSs (with protein)::4,622
Genes (RNA)::112
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::83
ncRNAs::7
Pseudo Genes (total)::62
CDSs (without protein)::62
Pseudo Genes (ambiguous residues)::0 of 62
Pseudo Genes (frameshifted)::32 of 62
Pseudo Genes (incomplete)::32 of 62
Pseudo Genes (internal stop)::11 of 62
Pseudo Genes (multiple problems)::11 of 62
Pseudo Genes (short protein)::1 of 62
##Genome-Annotation-Data-END##

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Enterobacter asburiae LF7a
collection_date::Missing
lat_lon::Missing
depth::Missing
alt_elev::Missing
country::Missing
environment::Missing
num_replicons::3
ref_biomaterial::Missing
biotic_relationship::Missing
trophic_level::Missing
rel_to_oxygen::Missing
isol_growth_condt::Missing
sequencing_meth::WGS
assembly::Newbler v. 2.3 (pre-release)
finishing_strategy::Finished
GOLD Stamp ID::Gi10731
Gene Calling Method::Prodigal 1.4, GenePRIMP
Cell Shape::Rod-shaped
Motility::Nonmotile
Gram Staining::Gram-
##MIGS-Data-END##

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_000224675.1
Current Name::Enterobacter soli
Previous Name::Enterobacter asburiae LF7a
Date Updated::2019-04-22
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_001654845.1
A1 Name::Enterobacter soli
A1 ANI::99.99844%
A1 Query Coverage::98.93%
A1 Subject Coverage::99.95%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_001521715.1
A2 Name::Enterobacter asburiae LF7a
A2 ANI::86.90194%
A2 Query Coverage::70.02%
A2 Subject Coverage::73.02%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length5,012,132
Total ungapped length5,012,132
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000224685.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003026.1=NC_015968.1
Plasmid pENTAS01CP003027.1=NC_015963.1
Plasmid pENTAS02CP003028.1=NC_015969.1

Assembly statistics

MoleculeTotal
Length
All5,012,132
Chromosome 4,812,833
Plasmid pENTAS01166,725
Plasmid pENTAS0232,574

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter soliEnterobacter soli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900185935.1Enterobacter solitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900185935.1Enterobacter solitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.1799.01
Best-match type99.9999.1799.01

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna