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ASM21960v1

Organism name:
Stutzerimonas stutzeri (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 1.1803
BioSample:
SAMN02603041
BioProject:
PRJNA68131
Submitter:
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences
Date:
2011/06/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000219605.1 (latest)
RefSeq assembly accession:
GCF_000219605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 294038 [UID] 292948 [GenBank] 294038 [RefSeq]

See Genome Information for Stutzerimonas stutzeri

There are 712 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 05:27:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,262
CDSs (total)::4,186
Genes (coding)::4,105
CDSs (with protein)::4,105
Genes (RNA)::76
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::59
ncRNAs::5
Pseudo Genes (total)::81
CDSs (without protein)::81
Pseudo Genes (ambiguous residues)::0 of 81
Pseudo Genes (frameshifted)::44 of 81
Pseudo Genes (incomplete)::35 of 81
Pseudo Genes (internal stop)::12 of 81
Pseudo Genes (multiple problems)::8 of 81
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,547,930
Total ungapped length4,547,930
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000219615.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002881.1=NC_015740.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,547,930

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Stutzerimonas stutzeriStutzerimonas stutzeri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016028655.1Stutzerimonas stutzeritype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016028655.1Stutzerimonas stutzeritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.7099.97
Best-match type99.9999.7099.97

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna