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ASM21271v2

Organism name:
Escherichia coli UMNK88 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Pathovar: enterotoxigenic Escherichia coli (ETEC)
Infraspecific name:
Strain: UMNK88
BioSample:
SAMN02604221
BioProject:
PRJNA42137
Submitter:
University of Minnesota
Date:
2011/05/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000212715.2 (latest)
RefSeq assembly accession:
GCF_000212715.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 516818 [UID] 516798 [GenBank] 516818 [RefSeq]

See Genome Information for Escherichia coli

There are 277974 assemblies for this organism

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History (Show revision history)

Comment

Bacteria is available from Dr. Timothy Johnson, University of Minnesota, email: joh04207@umn.edu.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000212715.2-RS_2024_05_08
Annotation Date::05/08/2024 01:39:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,796
CDSs (total)::5,667
Genes (coding)::5,333
CDSs (with protein)::5,333
Genes (RNA)::129
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::96
ncRNAs::11
Pseudo Genes (total)::334
CDSs (without protein)::334
Pseudo Genes (ambiguous residues)::0 of 334
Pseudo Genes (frameshifted)::144 of 334
Pseudo Genes (incomplete)::187 of 334
Pseudo Genes (internal stop)::65 of 334
Pseudo Genes (multiple problems)::59 of 334
Pseudo Genes (short protein)::4 of 334
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,666,764
Total ungapped length5,666,764
Total number of chromosomes and plasmids6

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000212725.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002729.1=NC_017641.1
Plasmid pUMNK88HQ023862.1=NC_017645.1
Plasmid pUMNK88_91CP002731.1=NC_017642.1
Plasmid pUMNK88_EntCP002732.1=NC_017640.1
Plasmid pUMNK88_HlyCP002733.1=NC_017643.1
Plasmid pUMNK88_K88CP002730.1=NC_017639.1

Assembly statistics

MoleculeTotal
Length
All5,666,764
Chromosome 5,186,416
Plasmid pUMNK88160,573
Plasmid pUMNK88_9190,868
Plasmid pUMNK88_Ent81,475
Plasmid pUMNK88_Hly65,549
Plasmid pUMNK88_K8881,883

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli UMNK88Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000210475.1Escherichia coli ETEC H10407claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000210475.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9980.7985.96
Best-match type98.9980.7985.96

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna