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Saccharomyces_cerevisiae_CLIB382-1.0

Organism name:
Saccharomyces cerevisiae CLIB382 (brewer's yeast)
Infraspecific name:
Strain: CLIB382
BioSample:
SAMN00198998
BioProject:
PRJNA60145
Submitter:
Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine
Date:
2011/04/26
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • genome length too small
GenBank assembly accession:
GCA_000209345.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AFDG01
Assembly method:
Newbler v. 2.0.0-PostRelease-10/28/2008
Genome coverage:
5.96x
Sequencing technology:
454

IDs: 272198 [UID] 272198 [GenBank]

See Genome Information for Saccharomyces cerevisiae

There are 1619 assemblies for this organism

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History (Show revision history)

Comment

S. cerevisiae strain CLIB382 was isolated from super-attenuated beer prepared in an Irish brewery pre-1952. The strain exists in several stock culture collections. It is in the CBS collection as CBS1782, in the DBVPG collection as DBVPG6175, in the ... NCYC collection as NCYC361, and in the NRRL collection as NRRL YB4238. The strain also may be obtained from Dr. Justin Fay, Washington University School of Medicine. DNA was prepared in the laboratory of Dr. Justin Fay by Juyoung Huh. All sequencing was performed using the rho- derivatives of monosporic clones or haploid clones from the strains described. 454 instruments were used to produce a survey coverage draft assembly. Total sequence coverage of the genome was 5.96X using a genome size estimate of 14-16 Mb. The combined sequence reads were assembled using the Newbler software (Roche 454).

This work was supported by NIH-NHGRI grant 5U54HG00307907.  more

Global statistics

Total sequence length10,255,887
Total ungapped length8,531,255
Gaps between scaffolds0
Number of scaffolds10,262
Scaffold N502,711
Scaffold L50813
Number of contigs12,493
Contig N50840
Contig L503,265
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)12,493

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,255,88710,2628,531,2552,7112,2310