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ASM20401v1

Organism name:
Asticcacaulis biprosthecium C19 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: C19
BioSample:
SAMN02469919
BioProject:
PRJNA43745
Submitter:
Indiana University
Date:
2011/04/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000204015.1 (latest)
RefSeq assembly accession:
GCF_000204015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADUH01
Assembly method:
Newbler v. 1.1.02.15
Genome coverage:
17x
Sequencing technology:
454 GS 20

IDs: 276468 [UID] 266558 [GenBank] 276468 [RefSeq]

See Genome Information for Asticcacaulis biprosthecium

History (Show revision history)

Comment

Global statistics

Total sequence length5,411,525
Total ungapped length5,302,252
Gaps between scaffolds0
Number of scaffolds6
Scaffold N501,052,103
Scaffold L502
Number of contigs317
Contig N5034,038
Contig L5046
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)317

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,411,52565,302,2521,052,1033110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Asticcacaulis biprosthecium C19Asticcacaulis biprosthecium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_028550395.1Asticcacaulis currenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.423.414.49

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected