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URL -- http://www.jgi.doe.gov
JGI Project ID: 4000368
Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov)
Contacts: Jim Fredrickson (Jim.fredrickson@pnl.gov)
 Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close ... all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/09/2022 02:09:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,592
CDSs (total)::4,455
Genes (coding)::4,405
CDSs (with protein)::4,405
Genes (RNA)::137
rRNAs::10, 9, 9 (5S, 16S, 23S)
complete rRNAs::10, 9, 9 (5S, 16S, 23S)
tRNAs::105
ncRNAs::4
Pseudo Genes (total)::50
CDSs (without protein)::50
Pseudo Genes (ambiguous residues)::0 of 50
Pseudo Genes (frameshifted)::24 of 50
Pseudo Genes (incomplete)::28 of 50
Pseudo Genes (internal stop)::11 of 50
Pseudo Genes (multiple problems)::11 of 50
CRISPR Arrays::1
##Genome-Annotation-Data-END##

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