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Organism name:
Shewanella sp. ANA-3 (g-proteobacteria)
Taxonomy check:
Infraspecific name:
Strain: ANA-3
DOE Joint Genome Institute
Assembly type:
Assembly level:
Complete Genome
Genome representation:
GenBank assembly accession:
GCA_000203935.1 (latest)
RefSeq assembly accession:
GCF_000203935.1 (latest)
RefSeq assembly and GenBank assembly identical:

IDs: 276428 [UID] 265708 [GenBank] 276428 [RefSeq]

See Genome Information for Shewanella sp. ANA-3

History (Show revision history)


URL -- http://www.jgi.doe.gov
JGI Project ID: 4000368
Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov)
Contacts: Jim Fredrickson (Jim.fredrickson@pnl.gov)
 Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close ... all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more


Annotation Provider::NCBI RefSeq
Annotation Date::04/09/2022 02:09:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,592
CDSs (total)::4,455
Genes (coding)::4,405
CDSs (with protein)::4,405
Genes (RNA)::137
rRNAs::10, 9, 9 (5S, 16S, 23S)
complete rRNAs::10, 9, 9 (5S, 16S, 23S)
Pseudo Genes (total)::50
CDSs (without protein)::50
Pseudo Genes (ambiguous residues)::0 of 50
Pseudo Genes (frameshifted)::24 of 50
Pseudo Genes (incomplete)::28 of 50
Pseudo Genes (internal stop)::11 of 50
Pseudo Genes (multiple problems)::11 of 50
CRISPR Arrays::1

Global statistics

Total sequence length5,251,146
Total ungapped length5,251,146
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000203945.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP000469.1=NC_008577.1
Plasmid unnamed1CP000470.1=NC_008573.1

Assembly statistics

Chromosome 14,972,204
Plasmid unnamed1278,942

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Shewanella sp. ANA-3Shewanella sp. ANA-3

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023283775.1Shewanella seohaensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.1180.6290.80

ANI result

Taxonomy check statusBest match statusComment
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