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Source database (GenBank or RefSeq) File type

ASM20385v3

Organism name:: Lactiplantibacillus plantarum WCFS1 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: WCFS1
Isolate:: NCIMB8826
BioSample:: SAMEA3138345
BioProject:: PRJNA356
Submitter:: Wageningen Centre for Food Sciences
Date:: 2011/08/01
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000203855.3 (latest)
RefSeq assembly accession:: GCF_000203855.3 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 63281 [UID] 780758 [GenBank] 780778 [RefSeq]

See Genome Information for Lactiplantibacillus plantarum

Pathogen Detection Resources

There are 1022 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000203855.3	=	GCF_000203855.3	ASM20385v3	Complete Genome	Latest GenBank, Latest RefSeq
GCA_000203855.2	=	GCF_000203855.2	ASM20385v2	Chromosome	GenBank suppressed, RefSeq suppressed
GCA_000203855.1	=	GCF_000203855.1	ASM20385v1	Complete Genome	Replaced GenBank, Replaced RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::10/25/2022 01:22:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,176
CDSs (total)::3,084
Genes (coding)::3,055
CDSs (with protein)::3,055
Genes (RNA)::92
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::72
ncRNAs::4
Pseudo Genes (total)::29
CDSs (without protein)::29
Pseudo Genes (ambiguous residues)::0 of 29
Pseudo Genes (frameshifted)::14 of 29
Pseudo Genes (incomplete)::13 of 29
Pseudo Genes (internal stop)::7 of 29
Pseudo Genes (multiple problems)::5 of 29
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,348,624
Total ungapped length	3,348,624
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	AL935263.2	=	NC_004567.2
Plasmid pWCFS101	CR377164.1	=	NC_006375.1
Plasmid pWCFS102	CR377165.1	=	NC_006376.1
Plasmid pWCFS103	CR377166.1	=	NC_006377.1

Molecule	Total Length
All	3,348,624
Chromosome	3,308,273
Plasmid pWCFS101	1,917
Plasmid pWCFS102	2,365
Plasmid pWCFS103	36,069

	ANI	Query coverage	Subject coverage
Declared type	99.33	86.93	91.20
Best-match type	99.33	86.93	91.20

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ASM20385v3

See Genome Information for Lactiplantibacillus plantarum

Pathogen Detection Resources

There are 1022 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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